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Finding biomarkers of anti-microbial drug resistance via a systems biology analysis of fungal pathogen interactions with the human immune system.
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Complete list of experiments curated and loaded in the Gene Expression Atlas
# Accession Title Experimental Factors
1 E-MEXP-750  Transcription profiling of human CD4 T cell subsets isolated from peripheral blood and palatine tonsils 1 EFs Cell_type [7 FVs]
2 E-MEXP-922  Transcription profiling of yeast with a fumarase point mutation or knock-out to model hereditary leiomyomatosis and renal cell cancer 1 EFs Strain_or_line [6 FVs]
3 E-MEXP-580  Transcription profiling of Saccharomyces cerevisiae response to nitrosative stress 4 EFs Time [5 FVs]
Compound [1 FVs]
Strain_or_line [5 FVs]
Dose [4 FVs]
4 E-MEXP-27  Transcription profiling of yeast wild type, xrn1, xrn1 upf1, xrn1 nmd2, and xrn1 upf3 strains to investigate mRNA decay 1 EFs Genotype [5 FVs]
5 E-MEXP-26  Transcription profiling of yeast to analyse mRNAs regulated by the nonsense-mediated and 5 to 3 mRNA Decay Pathways 1 EFs Genotype [6 FVs]
6 E-MEXP-445  Transcription profiling of the effect of hypoxia in human primary monocytes 1 EFs Growth_condition [2 FVs]
7 E-MEXP-696  Transcription profiling of C.elegans after infection with Microbacterium nematophilum 1 EFs Infect [2 FVs]
8 E-MEXP-174  Transcription profiling of Arabidopsis mutants mpk4 and ctr1 2 EFs Ecotype [3 FVs]
Genotype [4 FVs]
9 E-MEXP-442  Transcription profiling of yeast cells (homozygous deletion mutants of BY4743) grown in chemostats, sampled at steady state. Glucose and ammonium limitation, dilution rates 0.1 and 0.2 hr-1, gene deletions HO and HAP4 applied 3 EFs Growth_condition [2 FVs]
Genotype [2 FVs]
Media [2 FVs]
10 E-GEOD-2685  Transcription profiling of human advanced gastric cancer tissues and noncancerous gastric tissues to gain molecular understanding of carcinogenesis, progression, and diversity of gastric cancer 1 EFs Disease_state [2 FVs]
11 E-GEOD-2706  Transcription profiling of human dendritic cells to identify a combinatorial code by which DCs discriminate pathogens and provide (suggest) a rationale to design adjuvants for TH1 responses. 2 EFs Time [3 FVs]
Compound [4 FVs]
12 E-GEOD-1112  Transcription profiling of mouse RTOC cell cultures 2 EFs Compound [2 FVs]
Dose [2 FVs]
13 E-GEOD-360  Transcription profiling of human macrophages and dendritic cells exposed to phylogenetically distinct parasites 2 EFs Infect [7 FVs]
Cell_type [2 FVs]
14 E-GEOD-91  Transcription profiling of mice treated with arachidonate-rich fungal oil and fish oil on murine hepatic and hippocampal gene expression. 2 EFs Organism_part [2 FVs]
Growth_condition [4 FVs]
15 E-GEOD-423  Transcription profiling of S. cerevisiae sgs1 mutant and wild type strains grown under DNA damaging and control conditions 2 EFs Compound [2 FVs]
Genotype [2 FVs]
16 E-GEOD-443  Transcription profiling of human skin samples from borderline tuberculoid leprosy and lepromatous leprosy patients 1 EFs Disease_state [2 FVs]
17 E-GEOD-441  Transcription profiling of S. cerevisiae wild type and fks1 strains exposed to glucosamine 2 EFs Compound [3 FVs]
Genotype [2 FVs]
18 E-GEOD-461  Transcription profiling of galactose-grown S. cerevisiae cells exposed to lithium chloride 2 EFs Time [5 FVs]
Compound [2 FVs]
19 E-GEOD-8938  Transcription profiling of Drosophila infected with the parasitoid wasps Leptopilina boulardi and L. heterotoma to investigate infection strategies 1 EFs Infect [3 FVs]
20 E-GEOD-5800  Transcription profiling of skin from interferon regulatory factor 6 (Irf6) knockout mice and wild type mice to study the role for Irf6 in epidermal development. 1 EFs Genotype [2 FVs]
21 E-GEOD-6620  Transcription profiling of Saccharomyces cerevisiae mre11, rad50 and spo11 mutants in premeiosis and meiotic prophase 2 EFs Genotype [4 FVs]
Developmental_stage [2 FVs]
22 E-GEOD-3212  Transcription profiling of human alveolar macrophages from phenotypically normal smokers compared to non-smokers to identify new genes linking to early events in the molecular pathogenesis of COPD 3 EFs Sex [1 FVs]
Cell_type [1 FVs]
Clinical_information [2 FVs]
23 E-GEOD-6647  Transcription profiling of Saccharomyces cerevisiae edc3 mutant and wild type cultures 1 EFs Genotype [2 FVs]
24 E-GEOD-6688  Transcription profiling of lungs from wild type and MyD88 knockout mice infected with Chlamydia pneumoniae to explore the influence of MyD88 on induction of immune responses. 2 EFs Infect [2 FVs]
Genotype [2 FVs]
25 E-GEOD-5220  Transcription profiling of human CD14+ peripheral blood monocytes from HIV patients vs uninfected controls suggest that monocyte function is diminished during high-level HIV viremia and that this effect is mediated by chronic stimulation by type I interferons 2 EFs Disease_state [2 FVs]
Individual [8 FVs]
26 E-GEOD-5101  Transcription profiling time series of Rattus norvegicus skeletal muscle samples following a single acute dose of methylprednisolone 1 EFs Time [11 FVs]
27 E-GEOD-6691  Transcription profiling of human blood and bone marrow samples from patients with Waldenstron's macroglobulinemia, chronic lymphocytic leukemia (CLL), multiple myeloma and normal individuals to indentify genes with functions in B-cell differentiation and oncogenesis 2 EFs Disease_state [4 FVs]
Cell_type [2 FVs]
28 E-MEXP-526  Transcription profiling and translation status analysis in yeast with hydrogen peroxide and cyclohexamide treatment 3 EFs Compound [2 FVs]
Material_type [3 FVs]
Dose [3 FVs]
29 E-GEOD-5418  Transcription profiling of human peripheral blood mononuclear cell gene expression patterns in presymptomatic and clinically apparent malaria 2 EFs Disease_state [4 FVs]
Compound [2 FVs]
30 E-GEOD-4984  Transcription profiling of human monocyte derived dendritric cells matured with Galectin-1 or LPS vs controls 3 EFs Compound [4 FVs]
Individual [3 FVs]
Cell_type [3 FVs]
31 E-GEOD-4669  Transcription profiling of Saccharomyces cerevisiae cultures treated with the saponins tomatidine, tomatine or the sterol biosynthesis inhibitory compound fenpropimorph 3 EFs Time [3 FVs]
Compound [4 FVs]
Dose [4 FVs]
32 E-GEOD-4425  Transcription profiling of human acute monocytic leukemia cell line THP-1 cells incubated at 37 or 32 degrees C for 24h reveals moderate hypothermia produces substantial changes in cellular gene expression, in categories potentially of importance to systemic function. 1 EFs Growth_condition [2 FVs]
33 E-GEOD-4311  Transcription profiling of the effect of Azinomycin B on cultured Saccharomyces cerevisiae cells 2 EFs Compound [2 FVs]
Dose [2 FVs]
34 E-GEOD-512  Transcription profiling of peripheral blood mononuclear cells from rhesus macaques infected with SIV exhibiting rapid, typical or slow rates of disease progression 4 EFs Time [3 FVs]
Individual [12 FVs]
Infect [2 FVs]
Clinical_history [3 FVs]
35 E-GEOD-3806  Transcription profiling of Saccharomyces cerevisiae wild type and amino-terminus mutant histone H2B (HTB1) strains 1 EFs Genotype [5 FVs]
36 E-GEOD-4135  Transcription profiling of Saccharomyces cerevisiae wild type and amino-terminal mutant histone H3 and H4 strains 2 EFs Genotype [3 FVs]
Strain_or_line [4 FVs]
37 E-GEOD-3565  Transcription profiling of spleens from dual specificity phosphatase-1 (DUSP1) deficient and wild type mice to demonstrate a specific regulatory role of DUSP1 on a subset of LPS-induced genes that control the outcome of endotoxin shock. 2 EFs Compound [2 FVs]
Genotype [2 FVs]
38 E-GEOD-3491  Transcription profiling of human lpshigh and lpslow individuals to reveal interindividual variability in LPS responses 2 EFs Compound [2 FVs]
Phenotype [2 FVs]
39 E-GEOD-3297  Transcription profiling of human donor kidneys prior to surgical manipulation vs kidneys removed after laparoscopic donor nephrectomy (LDN) to demonstrate an altered renal transcriptome induced by different treatments 1 EFs Clinical_treatment [2 FVs]
40 E-GEOD-3220  Transcription profiling of Arabidopsis wild type and pen3 mutant plants inoculated with powdery mildew organisms Erysiphe cichoracearum or Blumeria graminis hordei 2 EFs Infect [3 FVs]
Genotype [2 FVs]
41 E-GEOD-3173  Transcription profiling of Rattus norvegicus liver samples from animals treated with D3T (3H-1,2-dithiole-3-thione) and controls 1 EFs Compound [2 FVs]
42 E-GEOD-2825  Transcription profiling of Rattus norvegicus liver samples from animals treated with D-penicillamine and controls 2 EFs Compound [2 FVs]
Dose [2 FVs]
43 E-GEOD-2737  Transcription profiling of human affected and unaffected skin of 4 psoriatic patients and normal skin of 3 psoriasis free individuals to reveal a complex regulation of molecular stress and immune gene responses 3 EFs Disease_state [2 FVs]
Observation [2 FVs]
Individual [5 FVs]
44 E-GEOD-2683  Transcription profiling of S. cerevisiae rnt1 mutant and wild type cultures 1 EFs Genotype [2 FVs]
45 E-GEOD-2343  Transcription profiling of S. cerevisiae TFIIH mutants treated with methyl methanesulfonate 2 EFs Compound [2 FVs]
Genotype [3 FVs]
46 E-GEOD-2224  Transcription profiling of S. cerevisiae cultures exposed to cisplatin, bleomycin, methylmethane sulfonate, sodium chloride or ethanol 1 EFs Compound [6 FVs]
47 E-GEOD-2096  Transcription profiling of S. cerevisiae FHL1 and IFH1 mutants 1 EFs Genotype [3 FVs]
48 E-GEOD-1739  Transcription profiling of blood samples from human patients with severe acute respiratory syndrome (SARS) 1 EFs Disease_state [2 FVs]
49 E-GEOD-1723  Transcription profiling of S. cerevisiae chemostat cultures limiting for carbon, nitrogen, phosphorus, sulfur under aerobic and anaerobic conditions 1 EFs Growth_condition [6 FVs]
50 E-GEOD-1432  Transcription profiling time series of the response of human microglial cells to interferon gamma 3 EFs Time [3 FVs]
Compound [2 FVs]
Individual [4 FVs]
51 E-GEOD-1311  Transcription profiling of the response of Saccharomyces cerevisiae to dessication and rehydration: Series 1 2 EFs Time [7 FVs]
Growth_condition [4 FVs]
52 E-GEOD-1312  Transcription profiling of the response of Saccharomyces cerevisiae to dessication and rehydration: Series 2 2 EFs Time [7 FVs]
Growth_condition [4 FVs]
53 E-GEOD-1313  Transcription profiling of the response of Saccharomyces cerevisiae to dessication and rehydration: Series 3 2 EFs Time [7 FVs]
Growth_condition [4 FVs]
54 E-GEOD-1314  Transcription profiling of Saccharomyces cerevisiae laboratory strain BY4743 and commercial dry active yeast 2 EFs Growth_condition [2 FVs]
Strain_or_line [2 FVs]
55 E-GEOD-1153  Transcription profiling time course of the response to estradiol by human osteosarcoma cells expressing estrogen receptors alpha or beta 3 EFs Time [5 FVs]
Compound [2 FVs]
Genotype [2 FVs]
56 E-GEOD-970  Transcription profiling of S. cerevisiae GPCR mutants gpr1 and gpa2 1 EFs Genotype [3 FVs]
57 E-GEOD-6879  Transcription profiling of Rattus norvegicus mammary gland tissue from animals fed on a soy protein isolate, genistein or control casein diet 1 EFs Growth_condition [3 FVs]
58 E-GEOD-5306  Transcription profiling of mouse male and female spleens at pre-puberty (3-4 week old), puberty (6-9 week old), and post-puberty (24-28 week old) to investigate immune response differences in male and female during puberty. 3 EFs Sex [2 FVs]
Age [3 FVs]
Developmental_stage [3 FVs]
59 E-GEOD-1140  Transcription profiling of human peripheral blood mononuclear cells before and after clinical_information 1 EFs Clinical_information [3 FVs]
60 E-GEOD-1639  Transcription profiling of S. cerevisiae RPD3 deletion mutants and histone H3 and H4 amino-terminus mutants 1 EFs Genotype [8 FVs]
61 E-GEOD-1814  Transcription profiling time course of a S. cerevisiae TOR2 temperature-sensitive mutant grown at non-permissive temperature 2 EFs Time [3 FVs]
Genotype [2 FVs]
62 E-GEOD-2405  Transcription profiling time course of the human polymorphonuclear leukocyte response to exposure to Anaplasma phagocytophilum or Staphylococcus aureus 2 EFs Time [7 FVs]
Infect [6 FVs]
63 E-GEOD-2828  Transcription profiling of Drosophila infected with Drosophila C virus reveals a third evolutionary conserved innate immunity pathway operates in drosophila and counters viral infection 2 EFs Disease_state [2 FVs]
Time [2 FVs]
64 E-GEOD-1934  Transcription profiling time course IFH1 overexpression by galactose induction in S. cerevisiae 2 EFs Time [5 FVs]
Genotype [2 FVs]
65 E-GEOD-1938  Transcription profiling of S. cerevisiae phosphomannose isomerase PMI40 deletion strain grown on mannose 1 EFs Dose [5 FVs]
66 E-GEOD-2076  Transcription profiling of S. cerevisiae wild type and leu3 mutant strains in ethanol-limited and ammonium-limited conditions 2 EFs Growth_condition [2 FVs]
Genotype [2 FVs]
67 E-GEOD-2349  Transcription profiling of S. cerevisiae histone H4 wild type and K91A mutant strain cultures 1 EFs Genotype [2 FVs]
68 E-GEOD-2407  Transcription profiling of S. cerevisiae spt10 null mutant and wild type cultures 1 EFs Genotype [2 FVs]
69 E-GEOD-2172  Transcription profiling of the mouse interleukin-10-deficient model for inflammatory bowel disease in C57Bl/6J and C3H/HeJBir strain backgrounds 2 EFs Genotype [2 FVs]
Strain_or_line [2 FVs]
70 E-GEOD-4324  Transcription profiling of mouse sex differences in response to Plasmodium chabaudi infection: involvement of gonadal steroids 4 EFs Sex [2 FVs]
Time [4 FVs]
Infect [2 FVs]
Clinical_treatment [2 FVs]
71 E-GEOD-6085  Transcription profiling of mouse cytotoxic T lymphocyte cell line CTLL-2 treated with interleukin-2 2 EFs Time [11 FVs]
Compound [2 FVs]
72 E-MEXP-1103  Transcription profiling of normal human monocytes in response to Aspergillus fumigatus 1 EFs Growth_condition [3 FVs]
73 E-MEXP-1139  Transcription profiling of yeast strains BY4743, Gis1delta and Rim15delta grown in ethanol- or glucose-limiting media 2 EFs Growth_condition [2 FVs]
Strain_or_line [3 FVs]
74 E-MEXP-1308  Translation profiling of yeast caf20 mutants 2 EFs Genotype [2 FVs]
Strain_or_line [2 FVs]
75 E-MEXP-1309  Translation profiling of yeast eap1 mutants 2 EFs Genotype [2 FVs]
Strain_or_line [2 FVs]
76 E-TABM-448  Transcription profiling of yeast wild type, Mig1, Mig2 and Mig3 single, double and triple knock outs 1 EFs Genotype [8 FVs]
77 E-MEXP-1958  Transcription profiling of human dendritic cells co-cultured with carcinoma cells or treated with lipopolysaccharide 3 EFs Growth_condition [2 FVs]
Compound [2 FVs]
Dose [2 FVs]
78 E-GEOD-3414  Transcription profiling of lungs from SCID and wild type mice infected with L3 stage infectious Nippostrongylus brasiliensis to examine the innate immune response to helminth infection in the lung. 3 EFs Time [6 FVs]
Infect [2 FVs]
Strain_or_line [2 FVs]
79 E-GEOD-5339  Transcription profiling of human lung fibroblasts exposed to vanadium pentoxide to identifiy genes associated with vanadium pentoxide-induced bronchitis 2 EFs Time [5 FVs]
Compound [3 FVs]
80 E-GEOD-5301  Transcription profiling of Saccharomyces cerevisiae treated with enediynes compared to gamma radiation 1 EFs Compound [6 FVs]
81 E-GEOD-5926  Transcription profiling of Saccharomyces cerevisiae response to weak organic acids in chemostat cultures 1 EFs Growth_condition [5 FVs]
82 E-GEOD-6073  Rap1 and Abf1 DNA-binding ts mutants and wild type after 1 hr at 37 C 1 EFs Genotype [3 FVs]
83 E-GEOD-10211  Transcription profiling of mouse cultured airway Epithelial Cell Response to Sendai virus infection 1 EFs Infect [2 FVs]
84 E-TABM-176  Transcription profiling of sigmoid colon mucosal biopsies from irratable bowel syndrome patients and healthy control subjects 3 EFs Disease_state [2 FVs]
Individual [61 FVs]
Clinical_information [2 FVs]
85 E-TABM-468  Transcription profiling of mouse embryonic fibroblasts from gsn -/- and wild type mice following treatment with bleomycin and staurosporin 2 EFs Compound [3 FVs]
Genotype [2 FVs]
86 E-TABM-291  Transcription profiling of yeast temperature-sensitive abf1-1 cells when grown at the restrictive temperature of 37oC as compared to wild-type cells grown under same conditions 5 EFs Time [2 FVs]
Growth_condition [4 FVs]
Genotype [4 FVs]
Developmental_stage [2 FVs]
Temperature [4 FVs]
87 E-TABM-192  Transcription profiling of S. cerevisiae (budding yeast) ume6 deletion strains vs wild-type in different media to determine the complement of Ume6 dependent genes during mitosis and meiosis 4 EFs Time [4 FVs]
Growth_condition [3 FVs]
Genotype [2 FVs]
Developmental_stage [2 FVs]
88 E-GEOD-3172  Transcription profiling of mouse fibroblast cells infected with adenoviral vector or mock infected 1 EFs Genetic_modification [2 FVs]
89 E-GEOD-3076  Transcription profiling time series of S. cerevisiae wild type and upf1 mutant strains following transcription inhibition by thiolutin 2 EFs Time [16 FVs]
Genotype [2 FVs]
90 E-GEOD-3200  Transcription profiling of S. cerevisiae paf1 and ctr9 mutants to identify direct targets of the Paf1/RNA polymerase II complex 3 EFs Time [6 FVs]
Compound [2 FVs]
Genotype [4 FVs]
91 E-GEOD-3253  Transcription profiling of brains from adult and aged mice injected with E. coli LPS to study the exaggerated neuroinflammation in aged mice following activation of peripheral innate immune system. 2 EFs Compound [2 FVs]
Developmental_stage [2 FVs]
92 E-GEOD-3284  Transcription profiling of human leukocytes after an inflammatory stimulus (bacterial endotoxin) to identify significant functional modules perturbed in response to this stimulus using network analysis 3 EFs Time [6 FVs]
Compound [2 FVs]
Individual [8 FVs]
93 E-GEOD-3305  Transcription profiling of rat spinal cord and oculomotor nucleus samples from animals aged 6, 18 and 30 months 2 EFs Organism_part [2 FVs]
Age [3 FVs]
94 E-GEOD-3489  Transcription profiling of human brain samples from HIV infected individuals with HIV encephalitis vs controls 1 EFs Disease_state [2 FVs]
95 E-GEOD-995  Transcription profiling of human acute myeloid leukemia cells to identify compounds inducing the differentiation of acute myeloid leukemia cells 6 EFs Time [6 FVs]
Disease_state [3 FVs]
Compound [19 FVs]
Cell_line [1 FVs]
Cell_type [2 FVs]
Dose [14 FVs]
96 E-GEOD-488  Transcription profiling of difference in immune response to Seoul hantavirus by Rattus norvegicus male and female animals 3 EFs Time [2 FVs]
Sex [2 FVs]
Infect [2 FVs]
97 E-MEXP-727  Transcription profiling of yeast respiration-related deletion mutants 2 EFs Genotype [7 FVs]
Clinical_information [3 FVs]
98 E-MEXP-585  Transcription profiling of yeast rho0 cells (complete deletion of the mitochondrial genome), in cells with either a single defective enzyme or several, vs cells after prolonged treatment with the bc1 inhibitors myxothiazol or antimycin to analyse respiratory defects 3 EFs Compound [3 FVs]
Genotype [11 FVs]
Dose [3 FVs]
99 E-GEOD-835  Transcription profiling of S. cerevisiae xylose metabolism mutants grown on glucose and xylose under aerobic and anaerobic conditions 3 EFs Growth_condition [2 FVs]
Compound [2 FVs]
Strain_or_line [2 FVs]
100 E-GEOD-8286  Transcription profiling of human monocytes to macrophage differentiation 2 EFs Time [3 FVs]
Cell_type [2 FVs]
101 E-MEXP-1635  Transcription profiling of human PBMCs from primary antiphospholipid syndrome and systemic lupus erythematosus patients and healthy controls 1 EFs Disease_state [3 FVs]
102 E-GEOD-13896  Transcription profiling of human broncheolar lavage samples reveals smoking-dependent reprogramming of alveolar macrophage polarization: implication for pathogenesis of COPD 2 EFs Disease_state [2 FVs]
Clinical_information [37 FVs]
103 E-GEOD-3624  Transcription profiling of human dendritic cells from PLOSL patients show abnormalities in pathways of actin bundling and immune response 2 EFs Disease_state [2 FVs]
Genotype [3 FVs]
104 E-GEOD-4859  Transcription profiling of zebrafish ovary treated with the reproductive toxicant 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) 2 EFs Compound [2 FVs]
Dose [4 FVs]
105 E-GEOD-6257  Transcription profiling of human lymphatic endothelial cells, mouse dermal cells and human skin cells reveals an inflammation-induced mechanism for leukocyte transmigration of lymphatic vessel endothelium. 2 EFs Compound [2 FVs]
Organism [2 FVs]
106 E-GEOD-6765  Transcription profiling of mouse with Aeromonas caviae infection, 24 hours 1 EFs Infect [2 FVs]
107 E-GEOD-8379  Transcription profiling of Saccharomyces cerevisiae reveals Stb3 deletion affects gene expression within 10 minutes of glucose addition 2 EFs Growth_condition [2 FVs]
Genotype [2 FVs]
108 E-MEXP-1623  Transcription profiling of skeletal muscle from wild type and mdx mice at three time points 4 EFs Disease_state [2 FVs]
Time [3 FVs]
Genotype [2 FVs]
Strain_or_line [2 FVs]
109 E-MEXP-998  Transcription profiling of yeast grown in SD media with addition of either methionine or hydrogen peroxide 2 EFs Compound [3 FVs]
Dose [3 FVs]
110 E-GEOD-3846  Transcription profiling of healthy human volunteers after consumin red wine vs. controls to investigate the cardioprotective effect of red wine 3 EFs Time [5 FVs]
Compound [4 FVs]
Individual [6 FVs]
111 E-TABM-326  microRNA profiling of human colorectal cancer samples with high microsatellite instability 1 EFs Phenotype [2 FVs]
112 E-GEOD-10964  Transcription profiling of mouse C57BL/6J strain infected with Sendai virus vs. UV irradiated virus to investigate virus-induced airway disease 2 EFs Time [2 FVs]
Infect [2 FVs]
113 E-GEOD-511  Transcription profiling of normal human peripheral blood mononuclear cells infected in vitro with the T cell tropic laboratory strain HIV type 1 RF samples at multiple timepoints. 2 EFs Time [5 FVs]
Infect [2 FVs]
114 E-MEXP-1551  Transcription profiling of yeast strains harbouring a temperature sensitive allele of the essential telomere capping gene cdc13-1 to investigate the genome-wide response to uncapped telomeres 4 EFs Time [5 FVs]
Individual [6 FVs]
Genotype [2 FVs]
Temperature [2 FVs]
115 E-GEOD-3982  Transcription profiling of human major leukocyte types isolated or differentiated and stimulated by LPS, IgE, and PMA from blood to characterise their expression profiles 5 EFs Organism_part [3 FVs]
Time [5 FVs]
Compound [4 FVs]
Cell_type [12 FVs]
Phenotype [2 FVs]
116 E-TABM-346  Transcription profiling of human patients with diffuse large B-cell lymphoma treated with CHOP or Ritxumab-CHOP 3 EFs Tumor_grading [4 FVs]
Clinical_treatment [2 FVs]
Clinical_information [112 FVs]
117 E-GEOD-5809  Transcription profiling of human endometrial stromal cells treated with human trophoblasts vs. control, sampled at multiple time points to investigate stromal cell response to paracrine signals from the trophoblast 2 EFs Time [3 FVs]
Growth_condition [2 FVs]
118 E-GEOD-3720  Transcription profiling of cultured Vd1 and Vd2 gd T cells following non-TCR agonist stimulation 4 EFs Compound [3 FVs]
Individual [2 FVs]
Cell_type [2 FVs]
Environmental_stress [3 FVs]
119 E-MEXP-2000  Transcription profiling of human monocyte-derived dendritic cells to study uptake of apoptotic cells by dendritci cells and induction of T-cell immunity 1 EFs Compound [3 FVs]
120 E-GEOD-10091  Transcription profiling of S. cerevisiae unfolding response 0 EFs
121 E-GEOD-14365  Transcription profiling of mouse wild type and Aire deficient mTECs 0 EFs
122 E-ATMX-26  Transcription profiling of Arabidopsis Umkirch-1/Umkirch-3 hybrid plants compared to siblings carrying a microRNA targeting the Umkirch-3 allele of At5g41750 5 EFs Organism_part [1 FVs]
Growth_condition [1 FVs]
Ecotype [1 FVs]
Genotype [2 FVs]
Temperature [1 FVs]
123 E-ATMX-25  Transcription profiling of Arabidopsis KZ10/Mrk-0 hybrids and their parents grown at 16C in long day conditions 4 EFs Organism_part [1 FVs]
Growth_condition [1 FVs]
Ecotype [3 FVs]
Temperature [1 FVs]
124 E-ATMX-27  Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, and Mir-0/Se-0 hybrids and their parents grown at 16C in long day conditions 4 EFs Organism_part [1 FVs]
Growth_condition [1 FVs]
Ecotype [6 FVs]
Temperature [1 FVs]
125 E-ATMX-24  Transcription profiling of Arabidopsis Umkirch-1/Umkirch-3 hybrid plants grown at 23C and 16C in short day conditions 4 EFs Organism_part [1 FVs]
Growth_condition [1 FVs]
Ecotype [3 FVs]
Temperature [2 FVs]
126 E-GEOD-10702  Transcription profiling of mouse ervical and skin tissues from HPV 16 E6 transgenic animals 0 EFs
127 E-GEOD-12061  Transcription profiling of S. cerevisiae to study Snf1 as a gene repressor 0 EFs
128 E-GEOD-17354  Transcription profiling of human CD4+ and CD8+ T-cells from gene therapy treated ADA patients and from healthy controls 0 EFs
129 E-GEOD-9985  Transcription profiling of S. cerevisiae sua5D and wildtype BY4742 strains 0 EFs
130 E-TABM-573  Transcription profiling of wild type and delta-sba1 yeast treated with radicicol to study gene regulation by sba1 2 EFs Compound [2 FVs]
Genotype [2 FVs]
131 E-TABM-544  Transcription profiling of yeast mutants to determine gene regulation by sterol and sphingolipid composition 1 EFs Genotype [11 FVs]
132 E-NASC-76  Transcription profiling of Arabidopsis seedlings treated with oligogalacturonides to assess how recognition of these compounds may contribute to defense against fungal pathogens 2 EFs Time [2 FVs]
Compound [3 FVs]
133 E-MTAB-78  Transcription profiling of yeast grown in a three-factor design to study the relationship between specific growth rate and genome-wide gene expression 3 EFs Compound [2 FVs]
Growth_condition [2 FVs]
Dilution_rate [3 FVs]
134 E-MEXP-914  Transcription profiling of human neutrophils cultured alone or with opsonized Candida albicans 1 EFs Disease_state [2 FVs]
135 E-GEOD-10006  Transcription profiling of human airway epithelium of smokers compared to nonsmokers reveals decreased expression of intelectin 1 in smokers 0 EFs
136 E-MEXP-822  Transcription profiling of diploid and tetraploid yeast cell cultures 1 EFs Ploidy [2 FVs]
137 E-MEXP-593  Transcription profiling of yeast grown in fermentors at different dilution rates 1 EFs Growth_condition [6 FVs]
138 E-MEXP-718  Transcription profiling of mouse glioma cell line grown in two types of media to investigate cell de-differentiation 1 EFs Media [2 FVs]
139 E-MEXP-724  Transcription profiling of yeast under conditions of ammonium, L-alanine or L-glutamine limitation 2 EFs Compound [4 FVs]
Dose [4 FVs]
140 E-MEXP-328  Transcription profiling of yeast response to ASF1 deletion 1 EFs Genotype [2 FVs]
141 E-MEXP-2362  Transcription profiing of a yeast strain containing 2 extra copies of Abf2p compared to its wild type counterpart 1 EFs Genotype [2 FVs]
142 E-MEXP-2354  Transcription profiling of Saccharomyces cerevisiae Gis1 overexpression time course 2 EFs Time [3 FVs]
Dose [2 FVs]
143 E-MEXP-2123  Transcription profiling of yeast with a C-terminal deletion of the RNA polymerase II elongation factor Spt6 or over-expression of Spt6 2 EFs Genetic_modification [2 FVs]
Genotype [3 FVs]
144 E-MEXP-2159  Transcription profiling of Saccharomyces cerevisiae reveals the Cbf1 basic helix-loop-helix transcription factor is required for the response to hydrogen peroxide stress 1 EFs Genotype [4 FVs]
145 E-MEXP-1498  Transcription profiling of yeast protrotophic laboratory strain CEN.PK113-7D grown under glutamine or ammonia limited conditions 2 EFs Time [2 FVs]
Growth_condition [2 FVs]
146 E-MEXP-1459  Transcription profiling of yeast over-expressing the meiosis-specific gene SPO13 during the mitotic cell cycle 2 EFs Time [3 FVs]
Genotype [2 FVs]
147 E-MEXP-1458  Transcription profiling of mouse kidney following infection with virulent or attenuated strains of Candida albicans 1 EFs Clinical_information [3 FVs]
148 E-MEXP-1407  Transcription profiling of S. cerevisiae wild type, SNF1, SNF4, and double knock outs grown to steady state in a chemostatU to investigate SNF1/4 dependent gene expression 1 EFs Genotype [4 FVs]
149 E-MEXP-1020  Transcription profiling of TBP1(E186D) yeast 1 EFs Genotype [6 FVs]
150 E-GEOD-9988  Transcription profiling of human monocytes after treatment vehicle, isotype control antibody, TREM1 antibody, LPS, isotype control antibody plus LPS and TREM1 antibody plus LP to invesigate innate immune responses to TREM-1 activation 0 EFs
151 E-GEOD-9840  Transcription profiling of S. cerevisiae strains containing the essential histone acetyltransferase, ESA1 or a bypass suppressor of ESA1 0 EFs
152 E-GEOD-9809  Transcription profiling of mouse GNMT knockouts 0 EFs
153 E-GEOD-9642  Transcription profiling of Anopheles gambiae larvae salivary glands 0 EFs
154 E-GEOD-9644  Transcription profiling of S. cerevisiae sfp1delta continuous cultures treated with glucode pulse 0 EFs
155 E-GEOD-9590  Transcription profiling of S. cerevisiae TPP 2-oxo acid decarboxylases 0 EFs
156 E-GEOD-9594  Transcription profiling of mouse cholecystokinin b receptor (Cckbr)-deficient mice after chronic constriction injury 0 EFs
157 E-GEOD-9514  Transcription profiling of S. cerevisiae response to heme deficiency and hypoxia 0 EFs
158 E-GEOD-9486  Transcription profiling of S. cerevisiae to identify Upf1p-associated transcripts in S. cerevisiae 0 EFs
159 E-GEOD-9488  Transcription profiling of mouse dendritic cells of cystic fibrosis animals without or with Pseudosmonas aeruginosa infection vs wild type dendritic cell controls 0 EFs
160 E-GEOD-9482  Transcription profiling of Saccharomyces cerevisiae nmd2::HIS3 GAL-NMD2 strain 0 EFs
161 E-GEOD-9465  Transcription profiling of mouse A/J strain exposed to ambient Baltimore particulate matter 0 EFs
162 E-GEOD-9423  Transcription profiling of lager brewing yeast strain during industrial propagation and fermentation 0 EFs
163 E-GEOD-9432  Transcription profiling of S. cerevisiae wild type reference strain, two simple mutants (not1-2 and spt3) and one double mutant (not1-2 spt3) reveals a SAGA-Independent function of SPT3 mediates transcriptional deregulation in a mutant of the Ccr4-Not Complex 0 EFs
164 E-GEOD-9378  Transcription profiling of human cell types infected with Dengue virus reveals TRAIL Is a Novel Antiviral Protein against Dengue Virus 0 EFs
165 E-GEOD-9383  Transcription profiling of mouse model of diesel enhanced allergic sensitization 0 EFs
166 E-GEOD-9387  Transcription profiling of rat primary hepatocyte cells after triazole antifungal toxicogenomics 0 EFs
167 E-GEOD-9295  Transcription profiling of S. cerevisiae with modulated expression of base excision repair players 0 EFs
168 E-GEOD-9300  Transcription profiling of rat ovary during primordial follicle assembly and development. 0 EFs
169 E-GEOD-9302  Transcription profiling of S. cerevisiae treated with phenelzine results in a perturbation in the system leads to period doubling 0 EFs
170 E-GEOD-9217  Transcription profiling of Saccharomyces cerevisiae for different levels of glucose 0 EFs
171 E-GEOD-9232  Transcription profiling of S. cerevisiae treated with absence of oxygen or depletion of ATP to investigate control of glycolytic enzyme fluxes 0 EFs
172 E-GEOD-9241  Transcription profiling of human dendritic cells matured by cadherin reveals disruption of E-cadherin-mediated adhesion induces a functionally distinct pathway of dendritic cell maturation 0 EFs
173 E-GEOD-9001  Transcription profiling of Drosophila female whole bodies treated with juvenile hormone 0 EFs
174 E-GEOD-8966  Transcription profiling of mouse liver to identify gene expression associated with Strain-Specific Ehrlichia chaffeensisa induced Hepatitis 0 EFs
175 E-GEOD-8997  Transcription profiling of mouse C57Bl/6 or gp91phox-/- animals following exposure to conidia or polystyrene beads 0 EFs
176 E-GEOD-8960  Transcription profiling of mouse knockouts reveals the TLR2/NOD2/RICK signaling axis regulates stimulus-specific IL-10 production 0 EFs
177 E-GEOD-8868  Transcription profiling of mouse splenic and small intestine lamina propria macrophages 0 EFs
178 E-GEOD-8897  Transcription profiling of S. cerevisiae during prolonged maltose limited cultivation 0 EFs
179 E-GEOD-8898  Transcription profiling of S. cerevisiae after prolonged selection in aerobic, glucose-limited chemostat cultures 0 EFs
180 E-GEOD-8895  Transcription profiling of S. cerevisiae grown in acetate, ethanol and maltose limited conditions to investigate transcriptional regulation in controlling fluxes in central carbon metabolism 0 EFs
181 E-GEOD-8900  Transcription profiling of S. cerevisiae to high carbon dioxide concentrations 0 EFs
182 E-GEOD-9006  Transcription profiling of human peripheral blood mononuclear cells from diabetic children 0 EFs
183 E-GEOD-8835  Transcription profiling of human CD4 T cells and CD8 T cells were obtained from peripheral blood mononuclear cells of previously untreated patients with CLL and healthy individuals reveals chronic lymphocytic leukemia cells induce changes in gene expression of CD4 and CD8 T cells. 0 EFs
184 E-GEOD-8799  Transcription profiling of S. cerevisiae wild type and cyclin mutant 0 EFs
185 E-GEOD-8761  Transcription profiling of S. cerevisiae ribosomal protein knockouts 0 EFs
186 E-GEOD-8760  Transcription profiling of human primary keratinocytes response to urocanic acid 0 EFs
187 E-GEOD-8764  Transcription profiling of human parotid gland gene expression to determine age and gender related changes 0 EFs
188 E-GEOD-8729  Transcription profiling of S. cerevisiae overexpressing transcriptional factors Kin28 and Pog1 suppresses the stress sensitivity caused by the rsp5 mutation 0 EFs
189 E-GEOD-8685  Transcription profiling of human CD4+ cutaneous T-cell lymphoma (CTCL) Sez-4 cell line activated with IL-2, IL-15 or IL-21. 0 EFs
190 E-GEOD-8687  Transcription profiling of human Sez-4 cell line starved of IL2 for 16h, followed by addition of IL-2 (020U), IL-15 (20ng/mL), IL-21 (100 ng/ml) or medium alone. 0 EFs
191 E-GEOD-8673  Transcription profiling of Saccharomyces cerevisiae commercial bakers yeast response to freeze injuries 0 EFs
192 E-GEOD-8636  Transcription profiling of mouse (SCID) after intestinal xenotransplants infected with Shigella 0 EFs
193 E-GEOD-8602  Transcription profiling of human amnion epithelial FL cells early genes induced by N-methyl-Na??-nitro-N-nitrosoguanidine 0 EFs
194 E-GEOD-8515  Transcription profiling of human monocyte derived macrophages response to IL-1 and IL-6 0 EFs
195 E-GEOD-8536  Transcription profiling of S. cerevisiae response to stress throughout a 15-day wine fermentation 0 EFs
196 E-GEOD-8527  Transcription profiling of human pharyngeal epithelial cells response to adherent pneumococci 0 EFs
197 E-GEOD-8453  Transcription profiling of yeast strain containing CDC34tm allele compared to WT 0 EFs
198 E-GEOD-8334  Transcription profiling of mouse dendritic cells reveals vitamin d3 affects tnfa mediated activation 0 EFs
199 E-GEOD-8326  Transcription profiling of S. cerevisiae to investigate repression of pleiotrophic drug resistance genes in using chimeric transcriptional repressors 0 EFs
200 E-GEOD-8327  Transcription profiling of zebrafish response to Mycobacterium marinum infection 0 EFs
201 E-GEOD-8319  Transcription profiling of Arabidopsis ALys RLK1 mutant reveals LysM receptor-like kinase mediates chitin perception and fungal resistance 0 EFs
202 E-GEOD-8269  Transcription profiling of mouse uterus from _gravidl_d18 wild type vs. Cox-1 knockout animal 0 EFs
203 E-GEOD-8252  Transcription profiling of rats after treatment with tienilic acid 0 EFs
204 E-GEOD-8166  Transcription profiling of human umbilical vein endothelial cells responses to Candida albicans hyphae and blastospores 0 EFs
205 E-GEOD-8025  Transcription profiling of mouse colon in a mouse model of infectious colitis - diarrhea as a cause of mortality 0 EFs
206 E-GEOD-8039  Transcription profiling of mouse expressing CD30L on T Cells 0 EFs
207 E-GEOD-8009  Transcription profiling of mouse dendritic cells derived from CAR transgenic mice treated with AdIkBa-SR adenovirus, AdOVA control virus, or left untreated and then stimulated with TNFa to identify NF-kB target genes in dendritic cells 0 EFs
208 E-GEOD-7957  Transcription profiling of mouse C57Bl6 MMP-7 and MMP-10 deficient mice Pseudomonas aeruginosa exposed airway epithelium. 0 EFs
209 E-GEOD-7850  Transcription profiling of human donor-matched retinal and choroidal vascular endothelial cells 0 EFs
210 E-GEOD-7820  Transcription profiling and proteomic profiling of Saccharomyces cerevisiae wild-type and GPA2 mutant strains 0 EFs
211 E-GEOD-7807  Transcription profiling of human monocytes reveals leukotriene D4 induces gene expression through cysteinyl leukotriene type I receptor. 0 EFs
212 E-GEOD-7796  Transcription profiling of Arabidopsis thaliana with reduced HSP90 levels 0 EFs
213 E-GEOD-7769  Transcription profiling of mouse macrophages in response to infection with Streptococcus pyogenes 0 EFs
214 E-GEOD-7788  Transcription profiling of Nodular lymphocyte predominant Hodgkins lymphoma vs T cell/histiocyte rich B cell lymphoma 0 EFs
215 E-GEOD-7741  Transcription profiling of human liver biopsies from HCV associated advance disease state patients 0 EFs
216 E-GEOD-7645  Transcription profiling of S. cerevisiae oxidative stress response 0 EFs
217 E-GEOD-7586  Transcription profiling of human placenta isolated from first time mothers with placental malaria 0 EFs
218 E-GEOD-7475  Transcription profiling of mouse inflammatory response to titanium dioxide particles exposure is enhanced during pregnancy 0 EFs
219 E-GEOD-7476  Transcription profiling of human bladder cancers to develop a clinical classification according to microarray expression profiles 0 EFs
220 E-GEOD-7454  Transcription profiling of human osteosarcoma derived cell lines treated with decitabine 0 EFs
221 E-GEOD-7392  Transcription profiling of human normal and fibrotic renal allografts one year post-transplant 0 EFs
222 E-GEOD-7355  Transcription profiling of human HUVEC cells infected with Candida 0 EFs
223 E-GEOD-7338  Transcription profiling of S. cerevisiae Histone H2A K4,7G mutant vs. wild type 0 EFs
224 E-GEOD-7337  Transcription profiling of S. cerevisiae H2A4-20 mutants vs. wild types 0 EFs
225 E-GEOD-7348  Transcription profiling of mouse naive and tolerant macrophages stimulated with LPS 0 EFs
226 E-GEOD-7310  Transcription profiling of mouse C57BL6J lung exposed to 2 weeks of cigarette smoke compared to age-matched controls 0 EFs
227 E-GEOD-7188  Transcription profiling of S. cerevisiae treated with gentamicin 0 EFs
228 E-GEOD-7138  Transcription profiling of human monocyte derived macrophages reveals induction of dendritic cell-like phenotype in macrophages during foam cell formation 0 EFs
229 E-GEOD-6965  Transcription profiling of human dendritic cells after infection with A. fumigatus 0 EFs
230 E-GEOD-6956  Transcription profiling of human prostate cancer between african-american and european-american men 0 EFs
231 E-GEOD-6705  Transcription profiling of S. cerevisiae cbc2-delta cells 0 EFs
232 E-GEOD-6674  Transcription profiling of mouse AM-14 B cells stimulated through the B cell receptor (BCR) and/or Toll-like receptors (TLR) 0 EFs
233 E-GEOD-6405  Transcription profiling of S. cerevisiae response to preferred and non-preferred nitrogen sources in C-lim chemostat cultures 0 EFs
234 E-GEOD-6477  Transcription profiling of human hyperdiploid multiple myeloma compared to non hyperdiploid multiple myeloma 0 EFs
235 E-GEOD-6376  Transcription profiling of mouse MyD88-deficient bone marrow-derived macrophages treated with Zymosan 1 EFs Compound [2 FVs]
236 E-GEOD-6328  Transcription profiling of S. cerevisiae H3 K4,36,79R mutant vs wild type in glucose media 0 EFs
237 E-GEOD-6327  Transcription profiling of S. cerevisiae Histone H3 K4,36,79R mutant 6 hr 0 EFs
238 E-GEOD-6319  Transcription profiling of S. cerevisiae Histone H3 K4,79R mutant vs. wild type 0 EFs
239 E-GEOD-6357  Transcription profiling of human CD8+ T cells in renal cell carcinoma 0 EFs
240 E-GEOD-6326  Transcription profiling of Saccharomyces Histone H3 K4,36,79R mutant 0 hr 0 EFs
241 E-GEOD-6277  Transcription profiling of S. cerevisiae reveaks increasing nadh oxidation reduces overflow metabolism 0 EFs
242 E-GEOD-6208  Transcription profiling of rat kidney from dahl salt-sensitive (S) and the renal protective S.SHR(2) congenic strain 0 EFs
243 E-GEOD-6185  Transcription profiling of S. cerevisiae stress response to exposure of the natural product pyocyanin. 0 EFs
244 E-GEOD-6190  Transcription profiling of S. cerevisiae respones to growth at different temperature and anaerobic C and N limitations in Yeast 0 EFs
245 E-GEOD-6092  Transcription profiling of human umbilical vein endothelial cells treated with Interferon-gamma (IFN-g), Borrelia burgdorferi or both IFN-g and Borrelia or untreated to investigate immune responses to Lyme disease 0 EFs
246 E-GEOD-6082  Transcription profiling of human Caco-2 intestinal epithelial cell line infected with wild type Shigella flexneri and a OspF mutantt reveals an injected bacterial effector targets chromatin access for NF-kB as a strategy to shape transcription of immune genes 0 EFs
247 E-GEOD-6090  Transcription profiling of human monocyte derived dendritic cells treated with DC-SIGN initiates an immature dendritic cell phenotype triggering Rho activation that is utilised by HIV-1 0 EFs
248 E-GEOD-5967  Transcription profiling of human peripheral blood to detect cardiac allograft rejection and response to immunosuppressive therapy 0 EFs
249 E-GEOD-5801  Transcription profiling of C. elegans mutants daf-2(e1368) and daf-2(e1368);pmk-1(km25), between daf-2(e1368), daf-2(e1368);daf-16(mgDf47) 0 EFs
250 E-GEOD-5793  Transcription profiling of C. elegans gene response to the pathogenic P. aeruginosa strain PA14. 0 EFs
251 E-GEOD-5788  Transcription profiling of human prolymphocytic leukemina T-cells and normal T-cells 0 EFs
252 E-GEOD-5734  Transcription profiling of Arabidopsis wild-type and an altered sensitivity mutant treated with mycotoxin 0 EFs
253 E-GEOD-5580  Transcription profiling of human blood leukocytes and T-cells 0 EFs
254 E-GEOD-5290  Transcription profiling of S. cerevisiae temperature sensitive eIF5A mutant shows accumulation of transcripts targeted to the Nonsense Mediated Decay pathway 0 EFs
255 E-GEOD-5185  Transcription profiling of S. cerevisiae Spt15p mutant and selection led to dominant mutations that conferred increased tolerance and more efficient glucose conversion to ethanol 0 EFs
256 E-GEOD-4807  Transcription profiling of S. cerevisiae in carbon-limited anaerobic/aerobic growth 0 EFs
257 E-GEOD-4709  Transcription profiling of S. cerevisiae Gcn4p-mediated transcriptional stress response 0 EFs
258 E-GEOD-4295  Transcription profiling of S. cerevisiae samples exposed to sugar stress during fermentation 0 EFs
259 E-GEOD-3997  Transcription profiling of mouse T cell populations undergoing negative or positive selection for an Aire-dependent organ specific antigen 0 EFs
260 E-GEOD-3821  Transcription profiling of S. cerevisiae exposed to the sudden addition of glucose - short term perturbation 0 EFs
261 E-GEOD-3554  Transcription profiling of mouse model of glaucoma retinal RNA from DBA/2J mice at 3 months before disease onset, and at 8 months, after IOP elevation 2 EFs Disease_state [2 FVs]
Age [6 FVs]
262 E-GEOD-22529  Gene expression profiles in CLL 2 EFs Disease_state [2 FVs]
Cell_type [2 FVs]
263 E-GEOD-20198  ATF3 is a positive regulator of human IFN gene expression 0 EFs
264 E-GEOD-1975  Transcription profiling and genotyping, detection of allele specific gene expression of Saccharomyces BY, isogenic to S288C, and RM, a wild vineyard strain 0 EFs
265 E-GEOD-19156  Transcription profiling of S. cerevisiaeAir-liquid interfacial biofilm vs planktonic S. cerevisiae cells 0 EFs
266 E-GEOD-19234  Transcription profiling of human metastatic melanoma lesions, immune profile and mitotic index enhance clinical staging in predicting patient survival. 0 EFs
267 E-GEOD-19016  Transcription profiling of S. cerevisiae metabolic responce to iron deficiency 0 EFs
268 E-GEOD-19060  Transcription profiling of human meniscal degeneration and meniscal 0 EFs
269 E-GEOD-18752  Transcription profiling of mouse natural helper cell 0 EFs
270 E-GEOD-18348  Transcription profiling of mouse reveals induction of intestinal Th17 cells by segmented filamentous bacteria 0 EFs
271 E-GEOD-18314  Transcription profiling of S. cerevisiae response to high furfural is based on NADPH-dependent reduction by at least two oxireductases 0 EFs
272 E-GEOD-18037  Transcription profiling of Saccharomyces cerevisiae early response to the antimalarial drug quinine 0 EFs
273 E-GEOD-17877  Transcription profiling of Saccharomyces `responses to inhibitors in an industrial strain of yeast and the adapted strains 0 EFs
274 E-GEOD-1693  Transcription profiling of S. cerevisiae novel response to microtubule perturbation in meiosis 0 EFs
275 E-GEOD-16652  Transcription orofiling of Saccharomyces cerevisiae upon exposure to aaxitoxin 0 EFs
276 E-GEOD-16451  Transcription profiling of human BE(2)-C neuronal responses to WEEV infection 0 EFs
277 E-GEOD-16450  Transcription profiling of human BE(2)-C neuronal responses to type I IFN stimulation 0 EFs
278 E-GEOD-16346  Transcription profiling of Sachharomyces cerevisiae cultures following L-carnitine supplementation 0 EFs
279 E-GEOD-16363  Transcription profiling of human lymphatic tissue reveals stage-specific, gene-expression signatures in hiv-1 infection 0 EFs
280 E-GEOD-16210  Transcription profiling of mouse Naive Treg, allogeneic tumor-activated Treg, and GVHD-activated Treg cells 0 EFs
281 E-GEOD-15955  Transcription profiling of mouse colon epithelium of STAT3IEC knockout in acute DSS colitis 0 EFs
282 E-GEOD-15936  Transcription profiling of Saccharomyces cerevisiae under serial stresses 0 EFs
283 E-GEOD-15754  Transcription profiling of mouse dendritic cells from Peyers patches and epidermis 0 EFs
284 E-GEOD-15733  Transcription profiling of mouse D44highCD62L-CD25- CD4+ T cells of murine (C57BL/6 mice) bone marrow were compared to those of the spleen 0 EFs
285 E-GEOD-15659  Transcription profiling of human CD4+ FoxP3-expressing or non-expressing subsets T cells 0 EFs
286 E-GEOD-15640  Transcription profiling of mouse salivary gland during development and onset of xerostomia in mouse model of Sjogrens syndrome-like disease 0 EFs
287 E-GEOD-15461  Transcription profiling of Saccharomyces cerevisiae reveals insufficiency of copper ion homeostasis causes freeze-thaw injury 0 EFs
288 E-GEOD-15269  Transcription profiling of Saccharomyces cerevisiae mutant delta-spe3 delta-fms1 after spermidine treatment 0 EFs
289 E-GEOD-15094  Transcription profiling of S. cerervisiae chemostat growth samples reveals resistance to hop iso-I?-acids in yeast involves active export and vacuolar sequestration 0 EFs
290 E-GEOD-14942  Transcription profiling of Saccharomyces cerevisiae effect of copper ion on recovery process from freeze-thaw injury 0 EFs
291 E-GEOD-14816  Transcription profiling of human immature dendritic cells after infection with human cytomegalovirus strain TB40E 0 EFs
292 E-GEOD-14769  Transcription profiling of mouse bone marrow-derived macrophages simulated with LPS, time series 0 EFs
293 E-GEOD-14416  Transcription profiling of mouse bcr-abl transformed cells reveals ICSBP-mediated immune protection against BCR-ABL-induced leukemia requires the CCL6 and CCL9 chemokines 0 EFs
294 E-GEOD-14390  Transcription profiling of human alveolar macrophages infected by B. anthracis spores 0 EFs
295 E-GEOD-14386  Transcription profiling of human peripheral blood mononuclear cells in vitro from CIS patients after Interferon beta-1a treatment 0 EFs
296 E-GEOD-13924  Transcription profiling of S. cerevisiae following the deletion of succinate dehydrogenase 0 EFs
297 E-GEOD-13911  Transcription profiling of human primary gastric tumors (MSI and MSS) and adjacent normal samples 0 EFs
298 E-GEOD-13755  Transcription profiling of vanillin tolerant Saccharomyces cerevisiae to investigate link with ergosterol contents 0 EFs
299 E-GEOD-13766  Transcription profiling of S. cerevisiae hst3hst4 mutant 0 EFs
300 E-GEOD-13725  Transcription profiling of Bos taurus white blood cells from Brahman and Holstein-Friesian cattle infested with the cattle tick Rhipicephalus microplus 0 EFs
301 E-GEOD-13736  Transcription profiling of human HUVEC innate immune response 0 EFs
302 E-GEOD-13738  Transcription profiling of human CD4+ memory T cells reveals they are preferential targets for bystander activation and apoptosis 0 EFs
303 E-GEOD-13695  Transcription profiling of wine yeast strains during colombar fermentation 0 EFs
304 E-GEOD-13684  Transcription profiling of yeast wild type BY4741, single deletion mutants delta-pbf1, delta-pbf2 and double mutant delta-pbf1 delta-pbf2 before and after heat shock 0 EFs
305 E-GEOD-13587  Transcription profiling of human peripheral blood mononuclear cells before and after vaccination with human papilloma virus-like particle 0 EFs
306 E-GEOD-13530  Transcription profiling of mouse knockouts for RNase-L-/- reveals an essential role for the antiviral endoribonuclease, RNase-L, in antibacterial immunity. 0 EFs
307 E-GEOD-13522  Transcription profiling of mouse skin 24 hours after intradermal infection with Trypanosoma cruzi 0 EFs
308 E-GEOD-13402  Transcription profiling of mouse SPARC-null vs. wild-type lens epithelium 0 EFs
309 E-GEOD-12890  Transcription profiling Saccharomyces cerevisiae xylose metabolism 0 EFs
310 E-GEOD-12860  Transcription profiling of human chondrocytes antirheumatic drug response: potential molecular targets to stimulate cartilage regeneration 0 EFs
311 E-GEOD-12799  Transcription profiling of rat myometrium in the transition from late pregnancy to parturition 0 EFs
312 E-GEOD-12839  Transcription profiling of humuan peripheral blood mononuclear cells stimulated with interleukin-12 and unstimulated controls 0 EFs
313 E-GEOD-12773  Transcription profiling of human airway epithelial cell-conditioned monocyte-derive dendritic cells 0 EFs
314 E-GEOD-12786  Transcription profiling of S. cerevisiae flocculating and non-flocculaing cells expressing FLO1 vs controls reveals FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast 0 EFs
315 E-GEOD-12586  Transcription profiling of human peripheral lymphocytes after exposure to cigarette smoke condensate in vitro 0 EFs
316 E-GEOD-12479  Transcription profiling of Saccharomyces cerevisiae expressing [GAR+] prion 0 EFs
317 E-GEOD-12506  Transcription profiling of mouse Foxp3- CD25- regulatory T cells 0 EFs
318 E-GEOD-12442  Transcription profiling of yeast grown in different levels of oxygen provision 0 EFs
319 E-GEOD-12421  Transcription profiling of mouse early B cells overexpressing OBF-1 0 EFs
320 E-GEOD-12332  Transcription profiling of Drosophila oviduct in mated and unmated females reveals mating induces an immune response and developmental switch in the oviduct 0 EFs
321 E-GEOD-12259  Transcription profiling of human dendritic cells treated with Echinacea purpurea phytocompounds 0 EFs
322 E-GEOD-12220  Transcription profiling of S. cerevisiae mRNA abundance following oxidative stress and DNA damage stress 0 EFs
323 E-GEOD-12221  Transcription profiling of S. cerevisiae mRNAs following oxidative stress and DNA damage 0 EFs
324 E-GEOD-12222  Transcription profiling of S. cerevisiae reveals transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation 0 EFs
325 E-GEOD-12150  Transcription profiling of yeast with Anc1p or without under basal or MMS exposed conditions 0 EFs
326 E-GEOD-12147  Transcription profiling of mouse treated with piperidine agonists for 24hr or 5 days for molecular characterization of novel peroxisome proliferator-activated receptor alpha agonists 0 EFs
327 E-GEOD-11971  Transcription profiling of human muscles from untreated children with juvenile dermatomyositis 0 EFs
328 E-GEOD-11943  Transcription profiling of human dendritic cell subtypes 0 EFs
329 E-GEOD-11898  Transcription profiling of mouse primary mesangial cells stimulated with DNA and RNA ligands 0 EFs
330 E-GEOD-11884  Transcription profiling of mouse naive T cells isolated from CD4+ CD62L+ CD44- T cells were isolated from Fur flox/flox and CD4 cre Fur flox/flox mice reveals T cell-expressed proprotein convertase furin is essential for maintenance of peripheral tolerance 0 EFs
331 E-GEOD-11871  Transcription profiling of Saccharomyces cerevisiae to investigate the role of rad23/rad4 protein complex in transcription and DNA repair in yeast 0 EFs
332 E-GEOD-11903  Gene expression profiles as response to etanercept treatment in patients with Psoriasis 0 EFs
333 E-GEOD-11755  Transcription profiling of human pediatric meningococcal sepsis patients reveals dynamic changes in NK-cell and cytotoxic molecules 0 EFs
334 E-GEOD-11494  Transcription profiling of mouse innate immune response of nasal-associated lymphoid tissue (NALT) to Streptococcus pyogenes infection. 0 EFs
335 E-GEOD-11446  Transcription profiling of mouse CD8 T cells stimulated with IL-2 complex in vivo 0 EFs
336 E-GEOD-11386  Transcription profiling of mouse memory versus naive B cells (1st generation and 2nd generation screens) 0 EFs
337 E-GEOD-11412  Transcription profiling of S. cerevisiae after Alpha-factor treatment 0 EFs
338 E-GEOD-11327  Transcription profiling of human dendritic cells activated with LPS IFNg over 48 hours 0 EFs
339 E-GEOD-11309  Transcription profiling of human APECED patients in vitro monocyte-differentiated dendritic cells (moDCs) vs. healthy controls. 0 EFs
340 E-GEOD-11282  Transcription profiling of S. cerevisiae strain with histone H4 R45 mutated to H with wild type yeast strain WY139 0 EFs
341 E-GEOD-11281  Transcription profiling of human peripheral blood mononuclear cells treated for 6h with the staphylococcal superantigens SEB and SEI 0 EFs
342 E-GEOD-11236  Transcription profiling of S. cerevisiae cth1cth2 cells independently transformed with pRS416 (V), pRS416-CTH1 (C) or pRS416-CTH2 (T) reveals cooperation of two mRNA-binding proteins drives metabolic adaptation to iron deficiency 0 EFs
343 E-GEOD-11238  Transcription profiling of mouse cell lines infected with Vaccinia E3L mutant virus 0 EFs
344 E-GEOD-11189  Transcription profiling of mouse CD11b+ cells after infection of lethal and sublethal wild type Yersinia enterolitica vs controls reveals IFN-g counteracts YopH mediated immune evasion 0 EFs
345 E-GEOD-11199  Transcription profiling of human macrophages to identify tuberculosis susceptibility genes 0 EFs
346 E-GEOD-11107  Transcription profiling of zebrafish brain and liver in adult female after starvation 0 EFs
347 E-GEOD-11047  Transcription profiling of Drosophila larval midgut treated with wheat germ agglutinin and starvation 0 EFs
348 E-GEOD-11035  Transcription profiling of mouse from wild type, heterozygous and 5HTT knockouts 0 EFs
349 E-GEOD-10933  Transcription profiling of S. cerevisiae mutant and wild type strains to identify genes regulated by the histone H3 K4,9,14,18,23,27,36,79G mutant 0 EFs
350 E-GEOD-11005  Transcription profiling of mouse samples after infection with Pneumocystis revelrobust immune response in immunocompetent mice but absent in CD40 ligand deficient mice 0 EFs
351 E-GEOD-10801  Transcription profiling of Arabidopsis expressing the fungal pathogen Cladosporium fulvum Avr2 0 EFs
352 E-GEOD-10779  siRNA knockdown of NatB N-terminal acetyltransferase (hNAT5) expression in human Hela cells with specific siRNAs 0 EFs
353 E-GEOD-10767  Transcription profiling of human BMPR2 mutation carriers with and without evidence of pulmonary arterial hypertension (PAH) 0 EFs
354 E-GEOD-10554  Transcription profiling of Saccharomyces cerevisiae treated WITH Pterostilbene, a NATURAL Dimethylether Analog OF Resveratrol 0 EFs
355 E-GEOD-10521  Transcription profiling of Saccharomyces cerevisiae to investigate specific roles for the Ccr4-Not complex subunits 0 EFs
356 E-GEOD-10412  Transcription profiling of rat 0 EFs
357 E-GEOD-10411  Transcription profiling of rat - triazole antifungal toxicogenomics: rat_repro_Liver 0 EFs
358 E-GEOD-10493  Transcription profiling of mouse males and females from 10 inbred strains fed atherogenic high-fat and control chow diets 0 EFs
359 E-GEOD-10410  Transcription profiling of human primary hepatocytes after treatment with triazole 0 EFs
360 E-GEOD-10406  Transcription profiling of human sinus mucosa from cystic fibrosis, chronic rhinosinusitis patients and controls 0 EFs
361 E-GEOD-10408  Transcription profiling of rat liver treated with myclobutanil or triadimefon triazole antifungals 0 EFs
362 E-GEOD-10323  Transcription profiling of Arabidopsis Col-0 inoculated with AM fungi to test for the presence of arbuscular mycorrhizal signalling pathways 0 EFs
363 E-GEOD-10316  Transcription profiling of human monocyte-derived dendritic cells stimulated with LPS, Poly(I:C), CD40L or a combination of IL-1-b, IL-6, TNF-a and PGE2 0 EFs
364 E-GEOD-10193  Transcription profiling of mouse PyV-MT treated with conjugated linoleic acid reveals it suppresses FAS and promotes mammary tumorigenesis in mice 0 EFs
365 E-GEOD-10205  Transcription profiling of lager yeast to investigate carbohydrate metabolism and the lager yeast transcriptome during brewery fermentation 0 EFs
366 E-GEOD-10192  Transcription profiling of mouse U33 cells treated with Rosiglitazone and or PPAR treatement reveals PPAR controls gene expression in MSC cells 0 EFs
367 E-GEOD-10238  Transcription profiling of rat model of neurpathic pain, treatment groups naive+ vehicle (2) naive + GPN (3) sham + vehicle (4) SNL + vehicle (5) SNL + GPNC 0 EFs
368 E-GEOD-10073  Transcription profiling of S. cerevisiae response to the antifungal compound sampangine 0 EFs
369 E-GEOD-10031  Transcription profiling of Saccharomyces cerevisiae delta-rsf1mutant during growth on, and transition to growth on glycerol as sole carbon source 0 EFs
370 E-GEOD-10040  Transcription profiling of human peripheral blood mononuclear cells treated with rabbit anti-thymocyte globulin (rATG) or horse ATG (hATG) 0 EFs
371 E-GEOD-5547  Transcription profiling of human CD14+ peripheral blood monocytes from subjects infected with H.drcreyi reveals host susceptibility to H. ducreyi infection is associated with unique transcript profiles in tissue and dendritic cells 0 EFs
SYBARIS is an EU Framework Programme 7 Collaborative Project. Grant Agreement Number 242220