Publications
1. Luigina Romani, Pathogen-induced immune regulation in transplantation (2010) Bone Marrow Transplantation Across Genetic Barriers, to be published by World Scientific Publishing Co Pte Ltd.
4. de Luca A, Bozza S, Zelante T, Zagarella S, D'Angelo C, Perruccio K, Vacca C, Carvalho A, Cunha C, Aversa F, Romani L. (2010) Non-hematopoietic cells contribute to protective tolerance to Aspergillus fumigatus via a TRIF pathway converging on IDO. Cellular & Molecular Immunology 7, 459-470.
8. Cavalieri, Duccio, Damariz Rivero, Luca Beltrame, Sonja I Buschow, Enrica Calura, Lisa Rizzetto, Sandra Gessani, et al. (2010) DC-ATLAS: a systems biology resource to dissect receptor specific signal transduction in dendritic cells. Immunome Research 6: 10.
9. Rizzetto L, Cavalieri D. (2010) A systems biology approach to the mutual interaction between yeast and the immune system. Immunobiology 215(9-10):762-9.
10. Goncalves A, Tikhonov A, Brazma A, Kapushesky M. (2011) A pipeline for RNA-seq data processing and quality assessment.Bioinformatics.
11. Duclos S., Clavarino G, Rousserie G, Goyette G, Boulais J, Camossetto V, Gatti E, Laboissière S, Pierre P, Desjardins M. (2011) The endosomal proteome of macrophage and dendritic cells. Proteomics 11(5):854-64.
14. Rizzetto L, Cavalieri D. (2011) Friend or foe: using systems biology to elucidate interactions between fungi and their hosts.Trends Microbiol.
15. Santamaría R, Rizzetto L, Bromley M, Zelante T, Lee W, Cavalieri D, Romani L, Miller B, Gut I, Santos M, Pierre P, Bowyer P, Kapushesky M. (2011) Systems biology of infectious diseases: a focus on fungal infections. Immunobiology
16. Cunha C, Giovannini G, Pierini A, Bell AS, Sorci G, Riuzzi F, Donato R, Rodrigues F, Velardi A, Aversa F, Romani L, Carvalho A (2011) Genetically-determined hyperfunction of the S100B/RAGE axis is a risk factor for aspergillosis in stem cell transplant recipients.PLoS One. 2011;6(11):e27962.
17. Carvalho A, Cunha C,Romani L (2011) Immunity and tolerance to infections in experimental hematopoietic transplantation. Best Pract Res Clin Haematol. 24(3):435-42.
18. Cunha C, Aversa F, Bistoni G, Casagrande A, Rodrigues F, Romani L, Carvalho A. (2011) Immunogenetic profiling to predict risk of invasive fungal diseases: where are we now? Immunol Invest. 40(7-8):723-34.
19. Ramazzotti M, Berná L, Stefanini I, Cavalieri D. (2012) A computational pipeline to discover highly phylogenetically informative genes in sequenced genomes: application to Saccharomyces cerevisiae natural strains.Nucleic Acids Res. PMID: 22266652.


